Getting Started

get start

• Installation
  • Prerequisites
  • UV Environment (Recommended)
  • Conda Environment
  • Verification
• Initialize Project
  • Download Atlas Data
• ROIs labeling
• Data Directory Structure
  • Placeholders
  • Reference (1)–(10)

gui

• MATLAB GUI
  • initial_alignment
  • slice_preprocessing
  • slice_registration
  • save_transform_mat
  • analysis_rois

tools

• View Tools
  • Command Usage